Research

From Data to Diagnosis and Discovery

Tibor Sloboda

VP of Artificial Intelligence Strategy

Matej Halinkovič

Applied Data Science Engineer

From Data to Diagnosis and Discovery

The medical field produces vast and complex data from radiology and histology images to molecular assays. With modern deep learning, AI is becoming an indispensable partner to clinicians and researchers, changing how we detect disease, measure structures, and anticipate adverse effects. The main goal of AI is not to replace human experts in these fields. It aims to reduce the workload of specialists and improve the availability of life saving procedures.

One active area where deep learning models demonstrate their usefulness is medical image analysis. Many diagnostic procedures rely on extracting supporting information from tissue samples in the form of cell counts and presence of various biological structures like inflamed regions or tumors. There are many challenges one has to deal with when developing AI systems in healthcare. Their black box nature is simply not acceptable when they are tasked with making decisions that influence the well-being of people.

Recent work on explainable segmentation shows how the black box problem of deep learning models can be overcome and how models can be designed to be transparent from the ground up. Intrinsically explainable deep learning architecture for semantic segmentation of histological structures in heart tissue demonstrates a segmentation approach that is interpretable by design, tailored to cardiac histology. Beyond the heart, clinicians often need robust, repeatable quantification of microscopic structures. Quantitative Assessment of Ciliary Ultrastructure with the Use of Automatic Analysis: PCD Quant presents an automated pipeline for evaluating cilia ultrastructure in suspected primary ciliary dyskinesia, illustrating how computer vision can standardize measurements that once required painstaking manual review.

A major practical challenge in pathology AI is variability in tissue stain appearance across labs and scanners. A group of papers tackle stain transformation and normalization with explainable generative models. Attention-Enhanced Unpaired xAI-GANs for Transformation of Histological Stain Images introduces attention mechanisms to guide stain-style transfer while preserving structure. **“xAI-CycleGAN, a Cycle-Consistent Generative Assistive Network”**adds discriminator-driven saliency to speed convergence and improve transparency, and Editable Stain Transformation of Histological Images Using Unpaired GANs explores controllable, user-steerable stain edits - all aimed at making downstream analysis more consistent and interpretable.

Medical vision is not the only area where our contributions on healthcare have made an impact. Our solutions are also accelerating toxicology by predicting risks earlier in development. MLtox, online phototoxicity prediction webpage offers a practical, web-based predictor that estimates phototoxic potential from molecular information. MLTox reduces reliance on costlier and slower experimental screens and helping researchers triage compounds before they reach the bench. These advancements help not only humans but animals as well, by serving as a more humane alternative to animal-based testing for evaluating new compounds.

At NetFire, we see these advances as building blocks for reliable AI in healthcare. From stain-aware, explainable vision systems to early-warning toxicity tools, our mission is to help organizations translate peer-reviewed research into safe, scalable deployments that improve patient care and accelerate discovery.


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